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Description of FILER metadata columns (XLS): FILER_v1_metadata_schema.xlsx.

For descriptions of the main output data types and data terms, please see data glossary, data terms, and references therein. For additional information, please also see data Summary page (‘Data description’ tab) and the About page.

#Identifier Data Source Download file Number of intervals bp covered Output type Genome build cell type Biosample type Biosamples term id Tissue category ENCODE Experiment id Biological replicate(s) Technical replicate Antibody Assay File format File size Release date Date added to FILER Data Category Genomic feature type Track Description system category life stage trackName
NGEN024795 ENCODE Download 797 16,468 microRNA quantifications hg38 GM23338 Cell line EFO:0007950 iPSC ENCSR894GAC 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,166 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=GM23338 originated from GM23248;Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF416FDJ.replacement.bigBed Stem Cell Unknown ENCODE GM23338 (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR894GAC] [Orig: Biosample_summary=GM23338 originated from GM23248;Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF416FDJ.replacement.bigBed] [Life stage: Unknown]
NGEN024969 ENCODE Download 797 16,468 microRNA quantifications hg38 Adrenal gland Tissue UBERON:0002369 Endocrine ENCSR895SFC 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,597 8/1/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Adrenal gland tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF484JJW.replacement.bigBed;Project=EN-TEx Endocrine Adult ENCODE Adrenal gland (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR895SFC] [Orig: Biosample_summary=Adrenal gland tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF484JJW.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN025203 ENCODE Download 797 16,468 microRNA quantifications hg38 Skin Tissue UBERON:0004264 Skin ENCSR798NKG 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 12,859 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Lower leg skin tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF878UAK.replacement.bigBed;Project=EN-TEx;tissue_of_origin=Lower leg;premapping_cell_type=Lower leg skin Integumentary Adult ENCODE Skin (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR798NKG] [Orig: Biosample_summary=Lower leg skin tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF878UAK.replacement.bigBed;Project=EN-TEx;tissue_of_origin=Lower leg;premapping_cell_type=Lower leg skin] [Life stage: Adult]
NGEN025380 ENCODE Download 797 16,468 microRNA quantifications hg38 Prostate gland Tissue UBERON:0002367 Male Reproductive ENCSR227VCK 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 14,892 8/1/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Prostate gland tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF877XCQ.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Prostate gland (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR227VCK] [Orig: Biosample_summary=Prostate gland tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF877XCQ.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN025490 ENCODE Download 797 16,468 microRNA quantifications hg38 Myocyte In vitro differentiated cells CL:0000187 Skeletal Muscle ENCSR782VMS 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 12,999 1/19/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Myocyte originated from LHCN-M2 male adult (41 years);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF104NQH.replacement.bigBed Muscular Adult ENCODE Myocyte (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR782VMS] [Orig: Biosample_summary=Myocyte originated from LHCN-M2 male adult (41 years);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF104NQH.replacement.bigBed] [Life stage: Adult]
NGEN025493 ENCODE Download 797 16,468 microRNA quantifications hg38 Thyroid gland Tissue UBERON:0002046 Endocrine ENCSR567SVD 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,934 8/1/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Thyroid gland tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF130XKD.replacement.bigBed;Project=EN-TEx Endocrine Adult ENCODE Thyroid gland (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR567SVD] [Orig: Biosample_summary=Thyroid gland tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF130XKD.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN025503 ENCODE Download 797 16,468 microRNA quantifications hg38 Gastrocnemius medialis Tissue UBERON:0011907 Skeletal Muscle ENCSR505IZZ 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,075 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Gastrocnemius medialis tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF117VCS.replacement.bigBed;Project=EN-TEx Muscular Adult ENCODE Gastrocnemius medialis (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR505IZZ] [Orig: Biosample_summary=Gastrocnemius medialis tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF117VCS.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN025839 ENCODE Download 797 16,468 microRNA quantifications hg38 GM23248 Cell line EFO:0005723 Skin ENCSR138ZXT 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,190 1/19/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=GM23248;Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF876RSC.replacement.bigBed Integumentary Unknown ENCODE GM23248 (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR138ZXT] [Orig: Biosample_summary=GM23248;Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF876RSC.replacement.bigBed] [Life stage: Unknown]
NGEN025923 ENCODE Download 797 16,468 microRNA quantifications hg38 Gastrocnemius medialis Tissue UBERON:0011907 Skeletal Muscle ENCSR655NLY 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,136 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Gastrocnemius medialis tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF446BNX.replacement.bigBed;Project=EN-TEx Muscular Adult ENCODE Gastrocnemius medialis (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR655NLY] [Orig: Biosample_summary=Gastrocnemius medialis tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF446BNX.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN025991 ENCODE Download 797 16,468 microRNA quantifications hg38 Uterus Tissue UBERON:0000995 Female Reproductive ENCSR486QHW 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,584 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Uterus tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF620UQT.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Uterus (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR486QHW] [Orig: Biosample_summary=Uterus tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF620UQT.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN026154 ENCODE Download 797 16,468 microRNA quantifications hg38 Adrenal gland Tissue UBERON:0002369 Endocrine ENCSR895SFC 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,597 8/1/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Adrenal gland tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF716FSI.replacement.bigBed;Project=EN-TEx Endocrine Adult ENCODE Adrenal gland (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR895SFC] [Orig: Biosample_summary=Adrenal gland tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF716FSI.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN026240 ENCODE Download 797 16,468 microRNA quantifications hg38 Atrium auricular region Tissue UBERON:0006631 Heart ENCSR258UGT 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 15,191 8/1/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Right atrium auricular region tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF759AOX.replacement.bigBed;Project=EN-TEx Cardiovascular Adult ENCODE Atrium auricular region (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR258UGT] [Orig: Biosample_summary=Right atrium auricular region tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF759AOX.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN026283 ENCODE Download 797 16,468 microRNA quantifications hg38 Vagina Tissue UBERON:0000996 Female Reproductive ENCSR591LEQ 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,969 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Vagina tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF436KFL.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Vagina (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR591LEQ] [Orig: Biosample_summary=Vagina tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF436KFL.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN026373 ENCODE Download 797 16,468 microRNA quantifications hg38 Thyroid gland Tissue UBERON:0002046 Endocrine ENCSR567SVD 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,786 8/1/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Thyroid gland tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF539QGK.replacement.bigBed;Project=EN-TEx Endocrine Adult ENCODE Thyroid gland (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR567SVD] [Orig: Biosample_summary=Thyroid gland tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF539QGK.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN026506 ENCODE Download 797 16,468 microRNA quantifications hg38 Left ventricle Tissue UBERON:0002084 Heart ENCSR888ZAA 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 14,931 8/1/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Heart left ventricle tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF947LNH.replacement.bigBed;Project=EN-TEx Cardiovascular Adult ENCODE Left ventricle (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR888ZAA] [Orig: Biosample_summary=Heart left ventricle tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF947LNH.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN026575 ENCODE Download 797 16,468 microRNA quantifications hg38 Bipolar neuron In vitro differentiated cells CL:0000103 Brain ENCSR765ZSI 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,293 1/19/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Bipolar neuron originated from GM23338 treated with 0.5 ?g/mL doxycycline hyclate for 4 days male adult (53 years);Lab=Ali Mortazavi, UCI;System=central nervous system;Submitted_track_name=ENCFF406AEN.replacement.bigBed Nervous Adult ENCODE Bipolar neuron (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR765ZSI] [Orig: Biosample_summary=Bipolar neuron originated from GM23338 treated with 0.5 ?g/mL doxycycline hyclate for 4 days male adult (53 years);Lab=Ali Mortazavi, UCI;System=central nervous system;Submitted_track_name=ENCFF406AEN.replacement.bigBed] [Life stage: Adult]
NGEN026924 ENCODE Download 797 16,468 microRNA quantifications hg38 Skin Tissue UBERON:0004264 Skin ENCSR021JTM 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 12,927 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Lower leg skin tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF952NBA.replacement.bigBed;Project=EN-TEx;tissue_of_origin=Lower leg;premapping_cell_type=Lower leg skin Integumentary Adult ENCODE Skin (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR021JTM] [Orig: Biosample_summary=Lower leg skin tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF952NBA.replacement.bigBed;Project=EN-TEx;tissue_of_origin=Lower leg;premapping_cell_type=Lower leg skin] [Life stage: Adult]
NGEN027146 ENCODE Download 797 16,468 microRNA quantifications hg38 Neuronal progenitor cell Stem cell NTR:0000711 Nervous ENCSR624LFP 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,114 1/19/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Neural progenitor cell originated from H9, female embryo (5 days);Lab=Ali Mortazavi, UCI;System=central nervous system;Submitted_track_name=ENCFF035RHI.replacement.bigBed;old_biosample_type=In vitro differentiated cells;premapping_cell_type=Neural stem progenitor cell Nervous Embryonic ENCODE Neuronal progenitor cell (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR624LFP] [Orig: Biosample_summary=Neural progenitor cell originated from H9, female embryo (5 days);Lab=Ali Mortazavi, UCI;System=central nervous system;Submitted_track_name=ENCFF035RHI.replacement.bigBed;old_biosample_type=In vitro differentiated cells;premapping_cell_type=Neural stem progenitor cell] [Life stage: Embryonic]
NGEN027411 ENCODE Download 797 16,468 microRNA quantifications hg38 HCT116 Cell line EFO:0002824 Digestive ENCSR165GUQ 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 12,694 12/10/15 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=HCT116;Lab=Ali Mortazavi, UCI;System=digestive system;Submitted_track_name=ENCFF574WCG.replacement.bigBed Digestive Unknown ENCODE HCT116 (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR165GUQ] [Orig: Biosample_summary=HCT116;Lab=Ali Mortazavi, UCI;System=digestive system;Submitted_track_name=ENCFF574WCG.replacement.bigBed] [Life stage: Unknown]
NGEN027547 ENCODE Download 797 16,468 microRNA quantifications hg38 Pancreas Tissue UBERON:0001150 Digestive ENCSR800WFS 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,116 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Body of pancreas tissue male adult (54 years);Lab=Ali Mortazavi, UCI;Submitted_track_name=ENCFF640TVG.replacement.bigBed;Project=EN-TEx Digestive Adult ENCODE Pancreas (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR800WFS] [Orig: Biosample_summary=Body of pancreas tissue male adult (54 years);Lab=Ali Mortazavi, UCI;Submitted_track_name=ENCFF640TVG.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN027638 ENCODE Download 797 16,468 microRNA quantifications hg38 Liver lobe Tissue UBERON:0001114 Liver ENCSR776XYQ 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 12,982 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Right lobe of liver tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF655SQN.replacement.bigBed;Project=EN-TEx Digestive Adult ENCODE Liver lobe (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR776XYQ] [Orig: Biosample_summary=Right lobe of liver tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF655SQN.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN027685 ENCODE Download 797 16,468 microRNA quantifications hg38 Left ventricle Tissue UBERON:0002084 Heart ENCSR425ZMS 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 14,815 8/1/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Heart left ventricle tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF499MAC.replacement.bigBed;Project=EN-TEx Cardiovascular Adult ENCODE Left ventricle (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR425ZMS] [Orig: Biosample_summary=Heart left ventricle tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF499MAC.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN027839 ENCODE Download 797 16,468 microRNA quantifications hg38 Endothelial cell Primary cell CL:0002618 Umbilical Cord ENCSR223FVU 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 12,661 1/6/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Ali Mortazavi, UCI;System=circulatory system,reproductive system;Submitted_track_name=ENCFF367NUV.replacement.bigBed;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein Embryo Newborn ENCODE Endothelial cell (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR223FVU] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Ali Mortazavi, UCI;System=circulatory system,reproductive system;Submitted_track_name=ENCFF367NUV.replacement.bigBed;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein] [Life stage: Newborn]
NGEN027993 ENCODE Download 797 16,468 microRNA quantifications hg38 Smooth muscle cell In vitro differentiated cells CL:0000192 Muscle ENCSR625DUG 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,234 1/19/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Smooth muscle cell originated from H9, female embryo (5 days);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF692WDQ.replacement.bigBed Muscular Embryonic ENCODE Smooth muscle cell (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR625DUG] [Orig: Biosample_summary=Smooth muscle cell originated from H9, female embryo (5 days);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF692WDQ.replacement.bigBed] [Life stage: Embryonic]
NGEN028057 ENCODE Download 797 16,468 microRNA quantifications hg38 Adrenal gland Tissue UBERON:0002369 Endocrine ENCSR381ADE 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,940 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Adrenal gland tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF871OZL.replacement.bigBed;Project=EN-TEx Endocrine Adult ENCODE Adrenal gland (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR381ADE] [Orig: Biosample_summary=Adrenal gland tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF871OZL.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN028317 ENCODE Download 797 16,468 microRNA quantifications hg38 Ovary Tissue UBERON:0000992 Female Reproductive ENCSR854NNW 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,818 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Ovary tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF706ZKV.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Ovary (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR854NNW] [Orig: Biosample_summary=Ovary tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF706ZKV.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN028455 ENCODE Download 797 16,468 microRNA quantifications hg38 Vagina Tissue UBERON:0000996 Female Reproductive ENCSR591LEQ 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,796 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Vagina tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF592AQC.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Vagina (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR591LEQ] [Orig: Biosample_summary=Vagina tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF592AQC.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN028599 ENCODE Download 797 16,468 microRNA quantifications hg38 Skin Tissue UBERON:0004264 Skin ENCSR798NKG 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 12,975 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Lower leg skin tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF746SFE.replacement.bigBed;Project=EN-TEx;tissue_of_origin=Lower leg;premapping_cell_type=Lower leg skin Integumentary Adult ENCODE Skin (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR798NKG] [Orig: Biosample_summary=Lower leg skin tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF746SFE.replacement.bigBed;Project=EN-TEx;tissue_of_origin=Lower leg;premapping_cell_type=Lower leg skin] [Life stage: Adult]
NGEN028620 ENCODE Download 797 16,468 microRNA quantifications hg38 Pancreas Tissue UBERON:0001150 Digestive ENCSR538MBL 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 12,901 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Body of pancreas tissue male adult (37 years);Lab=Ali Mortazavi, UCI;Submitted_track_name=ENCFF925PAF.replacement.bigBed;Project=EN-TEx Digestive Adult ENCODE Pancreas (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR538MBL] [Orig: Biosample_summary=Body of pancreas tissue male adult (37 years);Lab=Ali Mortazavi, UCI;Submitted_track_name=ENCFF925PAF.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN028697 ENCODE Download 797 16,468 microRNA quantifications hg38 Neuronal progenitor cell Stem cell NTR:0000711 Nervous ENCSR624LFP 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,088 1/19/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Neural progenitor cell originated from H9, female embryo (5 days);Lab=Ali Mortazavi, UCI;System=central nervous system;Submitted_track_name=ENCFF431FLR.replacement.bigBed;old_biosample_type=In vitro differentiated cells;premapping_cell_type=Neural stem progenitor cell Nervous Embryonic ENCODE Neuronal progenitor cell (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR624LFP] [Orig: Biosample_summary=Neural progenitor cell originated from H9, female embryo (5 days);Lab=Ali Mortazavi, UCI;System=central nervous system;Submitted_track_name=ENCFF431FLR.replacement.bigBed;old_biosample_type=In vitro differentiated cells;premapping_cell_type=Neural stem progenitor cell] [Life stage: Embryonic]
NGEN028907 ENCODE Download 797 16,468 microRNA quantifications hg38 K562 Cell line EFO:0002067 Blood ENCSR000AJL 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 14,218 2/2/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=K562;Lab=Ali Mortazavi, UCI;System=immune system;Submitted_track_name=ENCFF559GSR.replacement.bigBed Cardiovascular Unknown ENCODE K562 (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR000AJL] [Orig: Biosample_summary=K562;Lab=Ali Mortazavi, UCI;System=immune system;Submitted_track_name=ENCFF559GSR.replacement.bigBed] [Life stage: Unknown]
NGEN028921 ENCODE Download 797 16,468 microRNA quantifications hg38 Uterus Tissue UBERON:0000995 Female Reproductive ENCSR101DVP 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,548 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Uterus tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF038ZOE.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Uterus (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR101DVP] [Orig: Biosample_summary=Uterus tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF038ZOE.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN029085 ENCODE Download 797 16,468 microRNA quantifications hg38 Vagina Tissue UBERON:0000996 Female Reproductive ENCSR065OIA 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,756 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Vagina tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF699BEY.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Vagina (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR065OIA] [Orig: Biosample_summary=Vagina tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF699BEY.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN029209 ENCODE Download 797 16,468 microRNA quantifications hg38 Prostate gland Tissue UBERON:0002367 Male Reproductive ENCSR630JWA 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,746 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Prostate gland tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF132ICC.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Prostate gland (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR630JWA] [Orig: Biosample_summary=Prostate gland tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF132ICC.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN029415 ENCODE Download 797 16,468 microRNA quantifications hg38 HCT116 Cell line EFO:0002824 Digestive ENCSR165GUQ 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 12,790 12/10/15 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=HCT116;Lab=Ali Mortazavi, UCI;System=digestive system;Submitted_track_name=ENCFF555VUJ.replacement.bigBed Digestive Unknown ENCODE HCT116 (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR165GUQ] [Orig: Biosample_summary=HCT116;Lab=Ali Mortazavi, UCI;System=digestive system;Submitted_track_name=ENCFF555VUJ.replacement.bigBed] [Life stage: Unknown]
NGEN029421 ENCODE Download 797 16,468 microRNA quantifications hg38 Prostate gland Tissue UBERON:0002367 Male Reproductive ENCSR630JWA 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,862 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Prostate gland tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF205MSG.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Prostate gland (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR630JWA] [Orig: Biosample_summary=Prostate gland tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF205MSG.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN029453 ENCODE Download 797 16,468 microRNA quantifications hg38 Uterus Tissue UBERON:0000995 Female Reproductive ENCSR101DVP 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 14,396 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Uterus tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF119IBK.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Uterus (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR101DVP] [Orig: Biosample_summary=Uterus tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF119IBK.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN029668 ENCODE Download 797 16,468 microRNA quantifications hg38 GM12878 Cell line EFO:0002784 Blood ENCSR000AJK 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,842 2/2/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=GM12878;Lab=Ali Mortazavi, UCI;System=immune system;Submitted_track_name=ENCFF851PCC.replacement.bigBed Cardiovascular Unknown ENCODE GM12878 (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR000AJK] [Orig: Biosample_summary=GM12878;Lab=Ali Mortazavi, UCI;System=immune system;Submitted_track_name=ENCFF851PCC.replacement.bigBed] [Life stage: Unknown]
NGEN029835 ENCODE Download 797 16,468 microRNA quantifications hg38 Testis Tissue UBERON:0000473 Male Reproductive ENCSR882QTS 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,244 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Testis tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF165FXU.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Testis (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR882QTS] [Orig: Biosample_summary=Testis tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF165FXU.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN030316 ENCODE Download 797 16,468 microRNA quantifications hg38 Left ventricle Tissue UBERON:0002084 Heart ENCSR888ZAA 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 14,656 8/1/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Heart left ventricle tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF102CZB.replacement.bigBed;Project=EN-TEx Cardiovascular Adult ENCODE Left ventricle (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR888ZAA] [Orig: Biosample_summary=Heart left ventricle tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF102CZB.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN030397 ENCODE Download 797 16,468 microRNA quantifications hg38 Ovary Tissue UBERON:0000992 Female Reproductive ENCSR854NNW 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,640 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Ovary tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF362IFM.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Ovary (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR854NNW] [Orig: Biosample_summary=Ovary tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF362IFM.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN030405 ENCODE Download 797 16,468 microRNA quantifications hg38 Atrium auricular region Tissue UBERON:0006631 Heart ENCSR326JQW 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,062 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Right atrium auricular region tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF163WVQ.replacement.bigBed;Project=EN-TEx Cardiovascular Adult ENCODE Atrium auricular region (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR326JQW] [Orig: Biosample_summary=Right atrium auricular region tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF163WVQ.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN030712 ENCODE Download 797 16,468 microRNA quantifications hg38 Left ventricle Tissue UBERON:0002084 Heart ENCSR425ZMS 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 15,357 8/1/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Heart left ventricle tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF113OUT.replacement.bigBed;Project=EN-TEx Cardiovascular Adult ENCODE Left ventricle (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR425ZMS] [Orig: Biosample_summary=Heart left ventricle tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF113OUT.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN030745 ENCODE Download 797 16,468 microRNA quantifications hg38 K562 Cell line EFO:0002067 Blood ENCSR000AJL 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,944 2/2/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=K562;Lab=Ali Mortazavi, UCI;System=immune system;Submitted_track_name=ENCFF334ZSG.replacement.bigBed Cardiovascular Unknown ENCODE K562 (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR000AJL] [Orig: Biosample_summary=K562;Lab=Ali Mortazavi, UCI;System=immune system;Submitted_track_name=ENCFF334ZSG.replacement.bigBed] [Life stage: Unknown]
NGEN030767 ENCODE Download 797 16,468 microRNA quantifications hg38 GM23248 Cell line EFO:0005723 Skin ENCSR138ZXT 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,255 1/19/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=GM23248;Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF800WNM.replacement.bigBed Integumentary Unknown ENCODE GM23248 (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR138ZXT] [Orig: Biosample_summary=GM23248;Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF800WNM.replacement.bigBed] [Life stage: Unknown]
NGEN030810 ENCODE Download 797 16,468 microRNA quantifications hg38 Atrium auricular region Tissue UBERON:0006631 Heart ENCSR258UGT 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 14,982 8/1/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Right atrium auricular region tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF964EIQ.replacement.bigBed;Project=EN-TEx Cardiovascular Adult ENCODE Atrium auricular region (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR258UGT] [Orig: Biosample_summary=Right atrium auricular region tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=circulatory system;Submitted_track_name=ENCFF964EIQ.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN030901 ENCODE Download 797 16,468 microRNA quantifications hg38 MCF-7 Cell line EFO:0001203 Breast ENCSR201IBH 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,000 1/6/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=MCF-7;Lab=Ali Mortazavi, UCI;System=integumental system,exocrine system;Submitted_track_name=ENCFF645ATF.replacement.bigBed Reproductive Unknown ENCODE MCF-7 (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR201IBH] [Orig: Biosample_summary=MCF-7;Lab=Ali Mortazavi, UCI;System=integumental system,exocrine system;Submitted_track_name=ENCFF645ATF.replacement.bigBed] [Life stage: Unknown]
NGEN031131 ENCODE Download 797 16,468 microRNA quantifications hg38 HepG2 Cell line EFO:0001187 Liver ENCSR257DJT 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 12,438 12/10/15 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=HepG2;Lab=Ali Mortazavi, UCI;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF897GZH.replacement.bigBed Digestive Unknown ENCODE HepG2 (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR257DJT] [Orig: Biosample_summary=HepG2;Lab=Ali Mortazavi, UCI;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF897GZH.replacement.bigBed] [Life stage: Unknown]
NGEN031577 ENCODE Download 797 16,468 microRNA quantifications hg38 Liver lobe Tissue UBERON:0001114 Liver ENCSR776XYQ 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,930 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Right lobe of liver tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF109UBJ.replacement.bigBed;Project=EN-TEx Digestive Adult ENCODE Liver lobe (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR776XYQ] [Orig: Biosample_summary=Right lobe of liver tissue female adult (53 years);Lab=Ali Mortazavi, UCI;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF109UBJ.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN031718 ENCODE Download 797 16,468 microRNA quantifications hg38 H1-hESC Cell line EFO:0003042 Stem Cell ENCSR408BER 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 12,779 12/10/15 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=H1;Lab=Ali Mortazavi, UCI;Submitted_track_name=ENCFF664FQY.replacement.bigBed;premapping_cell_type=H1 Stem Cell Unknown ENCODE H1-hESC (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR408BER] [Orig: Biosample_summary=H1;Lab=Ali Mortazavi, UCI;Submitted_track_name=ENCFF664FQY.replacement.bigBed;premapping_cell_type=H1] [Life stage: Unknown]
NGEN031747 ENCODE Download 797 16,468 microRNA quantifications hg38 Pancreas Tissue UBERON:0001150 Digestive ENCSR800WFS 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,099 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Body of pancreas tissue male adult (54 years);Lab=Ali Mortazavi, UCI;Submitted_track_name=ENCFF835JHC.replacement.bigBed;Project=EN-TEx Digestive Adult ENCODE Pancreas (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR800WFS] [Orig: Biosample_summary=Body of pancreas tissue male adult (54 years);Lab=Ali Mortazavi, UCI;Submitted_track_name=ENCFF835JHC.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN031808 ENCODE Download 797 16,468 microRNA quantifications hg38 Testis Tissue UBERON:0000473 Male Reproductive ENCSR882QTS 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,353 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Testis tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF523FNX.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Testis (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR882QTS] [Orig: Biosample_summary=Testis tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF523FNX.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN032208 ENCODE Download 797 16,468 microRNA quantifications hg38 Testis Tissue UBERON:0000473 Male Reproductive ENCSR494FIS 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,420 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Testis tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF249XDU.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Testis (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR494FIS] [Orig: Biosample_summary=Testis tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF249XDU.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN032410 ENCODE Download 797 16,468 microRNA quantifications hg38 Hepatocyte In vitro differentiated cells CL:0000182 Liver ENCSR448MNV 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,335 2/6/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Hepatocyte originated from H9, female embryo (5 days);Lab=Ali Mortazavi, UCI;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF115IZF.replacement.bigBed Digestive Embryonic ENCODE Hepatocyte (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR448MNV] [Orig: Biosample_summary=Hepatocyte originated from H9, female embryo (5 days);Lab=Ali Mortazavi, UCI;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF115IZF.replacement.bigBed] [Life stage: Embryonic]
NGEN032582 ENCODE Download 797 16,468 microRNA quantifications hg38 Skin Tissue UBERON:0004264 Skin ENCSR021JTM 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 12,938 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Lower leg skin tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF543AXP.replacement.bigBed;Project=EN-TEx;tissue_of_origin=Lower leg;premapping_cell_type=Lower leg skin Integumentary Adult ENCODE Skin (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR021JTM] [Orig: Biosample_summary=Lower leg skin tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF543AXP.replacement.bigBed;Project=EN-TEx;tissue_of_origin=Lower leg;premapping_cell_type=Lower leg skin] [Life stage: Adult]
NGEN032629 ENCODE Download 797 16,468 microRNA quantifications hg38 Hepatocyte In vitro differentiated cells CL:0000182 Liver ENCSR448MNV 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,274 2/6/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Hepatocyte originated from H9, female embryo (5 days);Lab=Ali Mortazavi, UCI;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF500SNI.replacement.bigBed Digestive Embryonic ENCODE Hepatocyte (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR448MNV] [Orig: Biosample_summary=Hepatocyte originated from H9, female embryo (5 days);Lab=Ali Mortazavi, UCI;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF500SNI.replacement.bigBed] [Life stage: Embryonic]
NGEN032641 ENCODE Download 797 16,468 microRNA quantifications hg38 Testis Tissue UBERON:0000473 Male Reproductive ENCSR494FIS 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,276 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Testis tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF561ANR.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Testis (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR494FIS] [Orig: Biosample_summary=Testis tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF561ANR.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN032660 ENCODE Download 797 16,468 microRNA quantifications hg38 GM23338 Cell line EFO:0007950 iPSC ENCSR894GAC 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,111 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=GM23338 originated from GM23248;Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF904VEK.replacement.bigBed Stem Cell Unknown ENCODE GM23338 (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR894GAC] [Orig: Biosample_summary=GM23338 originated from GM23248;Lab=Ali Mortazavi, UCI;System=integumental system;Submitted_track_name=ENCFF904VEK.replacement.bigBed] [Life stage: Unknown]
NGEN032715 ENCODE Download 797 16,468 microRNA quantifications hg38 Endothelial cell Primary cell CL:0002618 Umbilical Cord ENCSR223FVU 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 12,579 1/6/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Ali Mortazavi, UCI;System=circulatory system,reproductive system;Submitted_track_name=ENCFF292ZCR.replacement.bigBed;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein Embryo Newborn ENCODE Endothelial cell (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR223FVU] [Orig: Biosample_summary=Endothelial cell of umbilical vein newborn;Lab=Ali Mortazavi, UCI;System=circulatory system,reproductive system;Submitted_track_name=ENCFF292ZCR.replacement.bigBed;previous_filer_cell_type=Endothelial cell of umbilical vein;tissue_of_origin=Umbilical vein;premapping_cell_type=Endothelial cell - umbilical vein] [Life stage: Newborn]
NGEN032789 ENCODE Download 797 16,468 microRNA quantifications hg38 Adrenal gland Tissue UBERON:0002369 Endocrine ENCSR381ADE 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,967 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Adrenal gland tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF769ZCR.replacement.bigBed;Project=EN-TEx Endocrine Adult ENCODE Adrenal gland (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR381ADE] [Orig: Biosample_summary=Adrenal gland tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF769ZCR.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN032817 ENCODE Download 797 16,468 microRNA quantifications hg38 Vagina Tissue UBERON:0000996 Female Reproductive ENCSR065OIA 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,992 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Vagina tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF868GRW.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Vagina (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR065OIA] [Orig: Biosample_summary=Vagina tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF868GRW.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN033117 ENCODE Download 797 16,468 microRNA quantifications hg38 Thyroid gland Tissue UBERON:0002046 Endocrine ENCSR869POD 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 14,181 1/31/17 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Thyroid gland tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF190WML.replacement.bigBed;Project=EN-TEx Endocrine Adult ENCODE Thyroid gland (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR869POD] [Orig: Biosample_summary=Thyroid gland tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=endocrine system;Submitted_track_name=ENCFF190WML.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN033231 ENCODE Download 797 16,468 microRNA quantifications hg38 Prostate gland Tissue UBERON:0002367 Male Reproductive ENCSR227VCK 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 14,421 8/1/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Prostate gland tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF443WHT.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Prostate gland (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR227VCK] [Orig: Biosample_summary=Prostate gland tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF443WHT.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN033822 ENCODE Download 797 16,468 microRNA quantifications hg38 HepG2 Cell line EFO:0001187 Liver ENCSR257DJT 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 12,460 12/10/15 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=HepG2;Lab=Ali Mortazavi, UCI;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF329PMO.replacement.bigBed Digestive Unknown ENCODE HepG2 (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR257DJT] [Orig: Biosample_summary=HepG2;Lab=Ali Mortazavi, UCI;System=digestive system,exocrine system,endocrine system;Submitted_track_name=ENCFF329PMO.replacement.bigBed] [Life stage: Unknown]
NGEN034342 ENCODE Download 797 16,468 microRNA quantifications hg38 MCF-7 Cell line EFO:0001203 Breast ENCSR201IBH 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 12,873 1/6/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=MCF-7;Lab=Ali Mortazavi, UCI;System=integumental system,exocrine system;Submitted_track_name=ENCFF754NCF.replacement.bigBed Reproductive Unknown ENCODE MCF-7 (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR201IBH] [Orig: Biosample_summary=MCF-7;Lab=Ali Mortazavi, UCI;System=integumental system,exocrine system;Submitted_track_name=ENCFF754NCF.replacement.bigBed] [Life stage: Unknown]
NGEN034467 ENCODE Download 797 16,468 microRNA quantifications hg38 GM12878 Cell line EFO:0002784 Blood ENCSR000AJK 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 14,630 2/2/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=GM12878;Lab=Ali Mortazavi, UCI;System=immune system;Submitted_track_name=ENCFF436PBP.replacement.bigBed Cardiovascular Unknown ENCODE GM12878 (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR000AJK] [Orig: Biosample_summary=GM12878;Lab=Ali Mortazavi, UCI;System=immune system;Submitted_track_name=ENCFF436PBP.replacement.bigBed] [Life stage: Unknown]
NGEN034564 ENCODE Download 797 16,468 microRNA quantifications hg38 Gastrocnemius medialis Tissue UBERON:0011907 Skeletal Muscle ENCSR655NLY 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,043 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Gastrocnemius medialis tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF064ECE.replacement.bigBed;Project=EN-TEx Muscular Adult ENCODE Gastrocnemius medialis (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR655NLY] [Orig: Biosample_summary=Gastrocnemius medialis tissue male adult (54 years);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF064ECE.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN034679 ENCODE Download 797 16,468 microRNA quantifications hg38 H1-hESC Cell line EFO:0003042 Stem Cell ENCSR408BER 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 12,742 12/10/15 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=H1;Lab=Ali Mortazavi, UCI;Submitted_track_name=ENCFF643ESY.replacement.bigBed;premapping_cell_type=H1 Stem Cell Unknown ENCODE H1-hESC (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR408BER] [Orig: Biosample_summary=H1;Lab=Ali Mortazavi, UCI;Submitted_track_name=ENCFF643ESY.replacement.bigBed;premapping_cell_type=H1] [Life stage: Unknown]
NGEN034721 ENCODE Download 797 16,468 microRNA quantifications hg38 Bipolar neuron In vitro differentiated cells CL:0000103 Brain ENCSR765ZSI 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,278 1/19/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Bipolar neuron originated from GM23338 treated with 0.5 ?g/mL doxycycline hyclate for 4 days male adult (53 years);Lab=Ali Mortazavi, UCI;System=central nervous system;Submitted_track_name=ENCFF950GOF.replacement.bigBed Nervous Adult ENCODE Bipolar neuron (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR765ZSI] [Orig: Biosample_summary=Bipolar neuron originated from GM23338 treated with 0.5 ?g/mL doxycycline hyclate for 4 days male adult (53 years);Lab=Ali Mortazavi, UCI;System=central nervous system;Submitted_track_name=ENCFF950GOF.replacement.bigBed] [Life stage: Adult]
NGEN034861 ENCODE Download 797 16,468 microRNA quantifications hg38 Smooth muscle cell In vitro differentiated cells CL:0000192 Muscle ENCSR625DUG 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,225 1/19/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Smooth muscle cell originated from H9, female embryo (5 days);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF091ZBG.replacement.bigBed Muscular Embryonic ENCODE Smooth muscle cell (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR625DUG] [Orig: Biosample_summary=Smooth muscle cell originated from H9, female embryo (5 days);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF091ZBG.replacement.bigBed] [Life stage: Embryonic]
NGEN035145 ENCODE Download 797 16,468 microRNA quantifications hg38 Myocyte In vitro differentiated cells CL:0000187 Skeletal Muscle ENCSR782VMS 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,119 1/19/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Myocyte originated from LHCN-M2 male adult (41 years);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF338RQN.replacement.bigBed Muscular Adult ENCODE Myocyte (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR782VMS] [Orig: Biosample_summary=Myocyte originated from LHCN-M2 male adult (41 years);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF338RQN.replacement.bigBed] [Life stage: Adult]
NGEN035207 ENCODE Download 797 16,468 microRNA quantifications hg38 Gastrocnemius medialis Tissue UBERON:0011907 Skeletal Muscle ENCSR505IZZ 2 2_1 Not applicable microRNA counts bed bed6+2 miRNA 13,016 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Gastrocnemius medialis tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF621KMO.replacement.bigBed;Project=EN-TEx Muscular Adult ENCODE Gastrocnemius medialis (repl. 2) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR505IZZ] [Orig: Biosample_summary=Gastrocnemius medialis tissue male adult (37 years);Lab=Ali Mortazavi, UCI;System=musculature;Submitted_track_name=ENCFF621KMO.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
NGEN035414 ENCODE Download 797 16,468 microRNA quantifications hg38 Uterus Tissue UBERON:0000995 Female Reproductive ENCSR486QHW 1 1_1 Not applicable microRNA counts bed bed6+2 miRNA 13,996 7/29/16 7/15/20 Expression microRNA counts microRNA quantifications Biosample_summary=Uterus tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF354ALP.replacement.bigBed;Project=EN-TEx Reproductive Adult ENCODE Uterus (repl. 1) microRNA counts microRNA quantifications (bed6+2 miRNA) [Experiment: ENCSR486QHW] [Orig: Biosample_summary=Uterus tissue female adult (51 years);Lab=Ali Mortazavi, UCI;System=reproductive system;Submitted_track_name=ENCFF354ALP.replacement.bigBed;Project=EN-TEx] [Life stage: Adult]
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